Well, from what I can find, this is a very common problem, and the "fix" is rather elusive....
Short version: You have a bad rule or an incorrect setting, corrupted or too many themes / theme modifiers, and/or corrupted or missing registry and/or Stardock settings.
The best advice that I see about how to deal with this oh-so-obviously-crummy-software is to "be sure to take lots of snapshots with the snapshot feature so you can go back a step when something goes wrong."
Personally, I've never used the thing(s), nor do I ever plan to....
GL, and sorry I can't give you more info.